Biomolecule large-amplitude motion and solvation dynamics: modelling and probes from THz to X-rays
Authors:
David M. Leitner a;
Martina Havenith b;
Martin Gruebele c
| Affiliations: | a Department of Chemistry, University of Nevada, Reno, NV 89557, USA |
b Lehrstuhl f r Physikalische Chemie II, Ruhr-Universit t Bochum, 44780 Bochum, Germany |
|
| c Departments of Chemistry and Physics, Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA |
DOI:
10.1080/01442350600862117
Publication Frequency:
4 issues per year
Published in:
International Reviews in Physical Chemistry,
Volume
25,
Issue
4
October
2006
, pages 553
- 582
Formats available:
HTML
(English)
:
PDF
(English)
View Article:
View Article (PDF)
View Article (HTML)
Abstract
Biomolecules are innately flexible, and undergo large-amplitude motions that affect the surrounding solvation shell. Dynamical X-ray scattering provides direct insight into global shape changes that the biomolecule undergoes during folding (1 nm and up length scale). THz spectroscopy directly probes solvation and collective motions on a somewhat smaller length scale (0.3-1 nm). Infrared spectroscopy looks at the influence of such motions on localized vibrational modes (up to 0.5 nm length scale). Molecular dynamics simulations and models of vibrational energy flow within biomolecules complement such experimental studies by providing a molecular-level explanation for the experimental observations. In this review, we consider the interplay between simulation and experiment across length scales for biomolecules such as carbohydrates and globular proteins.
view references (153)
|
|
|

Download Citation

r Physikalische Chemie II, Ruhr-Universit
t Bochum, 44780 Bochum, Germany
CiteULike
Del.icio.us
BibSonomy
Connotea