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Exophiala spinifera and its allies: diagnostics from morphology to DNA barcoding 

Authors: J. S. Zeng abc; G. S. De hoog ab
Affiliations:   a Centraalbureau voor Schimmelcultures Fungal Biodiversity Centre, Utrecht, The Netherlands
b Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
c Department of Dermatology and Venereology, Union Hospital, Tongji Medical College, Huazhong Science and Technology University, Wuhan, Hubei, P.R. China
DOI: 10.1080/13693780701799217
Publication Frequency: 8 issues per year
Published in: journal Medical Mycology, Volume 46, Issue 3 May 2008 , pages 193 - 208
First Published: May 2008
Formats available: HTML (English) : PDF (English)
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Abstract

Diagnostic features of morphology, physiology, serology and genetics of species belonging to the Exophiala spinifera clade (including 11 species: Exophiala oligosperma, E. spinifera, E. xenobiotica, E. jeanselmei, E. exophialae, E. nishimurae, E. bergeri, E. nigra, Rhinocladiella similis, Ramichloridium basitonum and Phaeoannellomyces elegans), comprising a large number of human-associated Exophiala species, are summarized. Several species have closely similar morphological characters and physiological profiles. Taxonomy is therefore primarily based on sequence diversity of the Internal Transcribed Spacer (ITS) region of ribosomal DNA (rDNA). Multilocus sequencing has shown that ITS is reliable for identification of the species in this clade, and is a therefore a good candidate for barcoding species of Exophiala. Species-specific fragments were searched in the ITS region of species in the Exophiala spinifera clade and can be used to design probes for diagnosis by hybridization.
Keywords: black yeasts; Exophiala; diagnostics; morphology; physiology; immunology; genetics; barcoding
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